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We use cmake to generate makefiles. If you don't have it you can install it with:
sudo apt-get install cmake
To compile the code for a module, generate the makefile with cmake and run make, as follows:
cmake . make
For example, let's say you extracted flamingo into the folder:
/home/joe/flamingo-4.0/src
Then if you want to build the filtertree module in /home/joe/flamingo-4.0/src/filtertree do the following:
cd /home/joe/flamingo-4.0/src/filtertree cmake . make
Please note that for the mattree module, there is no makefile provided, only a Visual C++ project file is provided. This module has not been compiled using GCC.